rs582681618 SNP Detail

Summary

• ID
  rs582681618
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128583099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGA GGTTCTTATT AGCCTGTTTT
  K
  TTTCTTTTTT TTTTTTTTTT TTTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss920685249	MGP_WTSI_10_128747230	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	T	T	G	G	G	T	G	T	G	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	RF/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs582681618					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	T	T	G	G	G	T	G	T	G	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920685249	MGP_WTSI_10_128747230	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128583099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2419	CpG island 2419	472 bp proximal
Gm31504	predicted gene, 31504	1348 bp downstream
Gm66065	predicted gene, 66065	881 bp upstream
Pym1	PYM homolog 1, exon junction complex associated factor	659 bp upstream
Rr224483	regulatory region 224483	898 bp distal
Rr224484	regulatory region 224484	101 bp proximal
Rr385481	regulatory region 385481	95 bp upstream
Tssr96442	transcription start site region 96442	1996 bp downstream
Tssr96443	transcription start site region 96443	756 bp downstream
Tssr96444	transcription start site region 96444	558 bp upstream
Tssr96445	transcription start site region 96445	620 bp upstream
Tssr96446	transcription start site region 96446	1271 bp upstream
Tssr96447	transcription start site region 96447	1521 bp upstream
Tssr99954	transcription start site region 99954	1764 bp upstream
Tssr99955	transcription start site region 99955	1731 bp upstream
Tssr99956	transcription start site region 99956	978 bp upstream
Tssr99957	transcription start site region 99957	918 bp upstream
Tssr99958	transcription start site region 99958	398 bp downstream
Tssr99959	transcription start site region 99959	490 bp downstream