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rs582722465 SNP Detail
Summary
  • ID
    rs582722465
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr3:93351473 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AGGAG CTGAGGCGCG AGCAGGAGCT
M
AGGCGCGAGC AGGAGTTGAG GCAGG                                      

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss916289610 MGP_WTSI_3_93444166 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs582722465 SNP A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss916289610 MGP_WTSI_3_93444166 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93351473 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 within coordinates
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 736 bp downstream
Tssr961 transcription start site region 961 160 bp downstream
Tssr962 transcription start site region 962 957 bp upstream
Tssr963 transcription start site region 963 994 bp upstream
Tssr964 transcription start site region 964 1090 bp upstream
Tssr30345 transcription start site region 30345 1777 bp downstream
Tssr30346 transcription start site region 30346 1752 bp downstream
Tssr30347 transcription start site region 30347 693 bp downstream
Tssr30348 transcription start site region 30348 673 bp downstream
Tssr30349 transcription start site region 30349 661 bp downstream
Tssr30350 transcription start site region 30350 617 bp downstream
Tssr30351 transcription start site region 30351 593 bp downstream
Tssr30352 transcription start site region 30352 543 bp downstream
Tssr30353 transcription start site region 30353 524 bp downstream
Tssr30354 transcription start site region 30354 509 bp downstream
Tssr30355 transcription start site region 30355 490 bp downstream
Tssr30356 transcription start site region 30356 436 bp downstream
Tssr30357 transcription start site region 30357 381 bp downstream
Tssr30358 transcription start site region 30358 263 bp downstream
Tssr30359 transcription start site region 30359 237 bp downstream
Tssr30360 transcription start site region 30360 207 bp downstream
Tssr30361 transcription start site region 30361 111 bp upstream
Tssr30362 transcription start site region 30362 125 bp upstream
Tssr30363 transcription start site region 30363 268 bp upstream
Tssr30364 transcription start site region 30364 339 bp upstream
Tssr30365 transcription start site region 30365 374 bp upstream
Tssr30366 transcription start site region 30366 426 bp upstream
Tssr30367 transcription start site region 30367 470 bp upstream
Tssr30368 transcription start site region 30368 487 bp upstream
Tssr30369 transcription start site region 30369 500 bp upstream
Tssr30370 transcription start site region 30370 507 bp upstream
Tssr30371 transcription start site region 30371 527 bp upstream
Tssr30372 transcription start site region 30372 540 bp upstream
Tssr30373 transcription start site region 30373 591 bp upstream
Tssr30374 transcription start site region 30374 609 bp upstream
Tssr30375 transcription start site region 30375 622 bp upstream
Tssr30376 transcription start site region 30376 648 bp upstream
Tssr30377 transcription start site region 30377 670 bp upstream
Tssr30378 transcription start site region 30378 703 bp upstream
Tssr30379 transcription start site region 30379 721 bp upstream
Tssr30380 transcription start site region 30380 801 bp upstream
Tssr30381 transcription start site region 30381 819 bp upstream
Tssr30382 transcription start site region 30382 878 bp upstream
Tssr30383 transcription start site region 30383 889 bp upstream
Tssr30384 transcription start site region 30384 898 bp upstream
Tssr30385 transcription start site region 30385 914 bp upstream
Tssr30386 transcription start site region 30386 935 bp upstream
Tssr30387 transcription start site region 30387 1026 bp upstream
Tssr30388 transcription start site region 30388 1052 bp upstream
Tssr30389 transcription start site region 30389 1066 bp upstream
Tssr30390 transcription start site region 30390 1138 bp upstream
Tssr30391 transcription start site region 30391 1157 bp upstream
Tssr30392 transcription start site region 30392 1175 bp upstream
Tssr30393 transcription start site region 30393 1192 bp upstream
Tssr30394 transcription start site region 30394 1212 bp upstream
Tssr30395 transcription start site region 30395 1237 bp upstream
Tssr30396 transcription start site region 30396 1286 bp upstream
Tssr30397 transcription start site region 30397 1303 bp upstream
Tssr30398 transcription start site region 30398 1378 bp upstream
Tssr30399 transcription start site region 30399 1425 bp upstream
Tssr30400 transcription start site region 30400 1910 bp upstream
Tssr30401 transcription start site region 30401 1930 bp upstream
Tssr34352 transcription start site region 34352 282 bp upstream
Tssr34353 transcription start site region 34353 276 bp upstream
Tssr34354 transcription start site region 34354 225 bp upstream
Tssr34355 transcription start site region 34355 128 bp upstream
Tssr34356 transcription start site region 34356 539 bp downstream
Tssr34357 transcription start site region 34357 584 bp downstream
Tssr34358 transcription start site region 34358 636 bp downstream
Tssr34359 transcription start site region 34359 705 bp downstream
Tssr34360 transcription start site region 34360 786 bp downstream
Tssr34361 transcription start site region 34361 807 bp downstream
Tssr34362 transcription start site region 34362 856 bp downstream
Tssr34363 transcription start site region 34363 883 bp downstream
Tssr34364 transcription start site region 34364 900 bp downstream
Tssr34365 transcription start site region 34365 914 bp downstream
Tssr34366 transcription start site region 34366 974 bp downstream
Tssr34367 transcription start site region 34367 1107 bp downstream
Tssr34368 transcription start site region 34368 1186 bp downstream
Tssr34369 transcription start site region 34369 1211 bp downstream
Tssr34370 transcription start site region 34370 1225 bp downstream
Tssr34371 transcription start site region 34371 1279 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory