rs582728647 SNP Detail

Summary

• ID
  rs582728647
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:49430577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGC GGTGAGCGGG GGGCGGGGCC
  K
  GGGCGGGGCG GGGATGGGCG GGCCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss921313537	MGP_WTSI_12_49383794	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs582728647					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921313537	MGP_WTSI_12_49383794	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:49430577 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4581	CpG island 4581	within coordinates
Foxg1	forkhead box G1	within coordinates
Gm34304	predicted gene, 34304	1966 bp upstream
Gm43517	predicted gene 43517	1380 bp upstream
Rr465759	regulatory region 465759	777 bp distal
Rr465760	regulatory region 465760	41 bp distal
Rr465761	regulatory region 465761	within coordinates
Rr465762	regulatory region 465762	1575 bp proximal
Tssr3838	transcription start site region 3838	538 bp upstream
Tssr113389	transcription start site region 113389	1799 bp downstream
Tssr113390	transcription start site region 113390	1716 bp downstream
Tssr113391	transcription start site region 113391	1127 bp downstream
Tssr113392	transcription start site region 113392	1103 bp downstream
Tssr113393	transcription start site region 113393	992 bp downstream
Tssr113394	transcription start site region 113394	689 bp downstream
Tssr113395	transcription start site region 113395	123 bp upstream
Tssr113396	transcription start site region 113396	331 bp upstream
Tssr113397	transcription start site region 113397	464 bp upstream
Tssr113398	transcription start site region 113398	493 bp upstream
Tssr113399	transcription start site region 113399	562 bp upstream
Tssr113400	transcription start site region 113400	572 bp upstream
Tssr113401	transcription start site region 113401	716 bp upstream
Tssr113402	transcription start site region 113402	766 bp upstream
Tssr113403	transcription start site region 113403	1141 bp upstream
Tssr113404	transcription start site region 113404	1167 bp upstream
Tssr113405	transcription start site region 113405	1192 bp upstream
Tssr113406	transcription start site region 113406	1395 bp upstream
Tssr113407	transcription start site region 113407	1650 bp upstream
Tssr113408	transcription start site region 113408	1858 bp upstream
Tssr116231	transcription start site region 116231	1964 bp upstream