rs582742131 SNP Detail

Summary

• ID
  rs582742131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:151923775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCC TGTGTGCGCG CCGCCGCCGC
  Y
  GCCGTCGCCG CCGCCGCCGC GCCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss915761748	MGP_WTSI_2_152081855	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs582742131					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915761748	MGP_WTSI_2_152081855	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151923775 () rs orientation: forward

Symbol	Name	Function Class
AA387200	expressed sequence AA387200	413 bp upstream
Cpgi12434	CpG island 12434	852 bp distal
Cpgi12435	CpG island 12435	within coordinates
Gm75114	predicted gene, 75114	362 bp downstream
Rr567274	regulatory region 567274	1491 bp distal
Rr567275	regulatory region 567275	408 bp distal
Rr567276	regulatory region 567276	316 bp distal
Rr567277	regulatory region 567277	within coordinates
Scrt2	scratch family zinc finger 2	mRNA-UTR
Tssr20749	transcription start site region 20749	1025 bp downstream
Tssr20750	transcription start site region 20750	981 bp downstream
Tssr20751	transcription start site region 20751	949 bp downstream
Tssr20752	transcription start site region 20752	916 bp downstream
Tssr20753	transcription start site region 20753	901 bp downstream
Tssr20754	transcription start site region 20754	880 bp downstream
Tssr20755	transcription start site region 20755	718 bp downstream
Tssr20756	transcription start site region 20756	603 bp downstream
Tssr20757	transcription start site region 20757	465 bp downstream
Tssr20758	transcription start site region 20758	231 bp downstream
Tssr20759	transcription start site region 20759	212 bp downstream
Tssr20760	transcription start site region 20760	30 bp downstream
Tssr20761	transcription start site region 20761	13 bp upstream