rs582752809 SNP Detail

Summary

• ID
  rs582752809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATC TTTGGGGAGA CCATGGTAGA
  R
  CTTGGAGCAC CATTCTCCTT GAAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss915059809	MGP_WTSI_1_150105497	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs582752809					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915059809	MGP_WTSI_1_150105497	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981248 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	848 bp distal
Rr24983	regulatory region 24983	952 bp distal
Tssr9248	transcription start site region 9248	1809 bp downstream
Tssr9249	transcription start site region 9249	1795 bp downstream
Tssr9250	transcription start site region 9250	1594 bp downstream
Tssr9251	transcription start site region 9251	1542 bp downstream
Tssr9252	transcription start site region 9252	1507 bp downstream
Tssr9253	transcription start site region 9253	1482 bp downstream
Tssr9254	transcription start site region 9254	1466 bp downstream
Tssr9255	transcription start site region 9255	1415 bp downstream
Tssr9256	transcription start site region 9256	1210 bp downstream
Tssr9257	transcription start site region 9257	1176 bp downstream
Tssr9258	transcription start site region 9258	1160 bp downstream
Tssr9259	transcription start site region 9259	1103 bp downstream
Tssr9260	transcription start site region 9260	1051 bp downstream
Tssr9261	transcription start site region 9261	1032 bp downstream
Tssr9262	transcription start site region 9262	1011 bp downstream
Tssr9263	transcription start site region 9263	999 bp downstream
Tssr9264	transcription start site region 9264	950 bp downstream
Tssr9265	transcription start site region 9265	923 bp downstream
Tssr9266	transcription start site region 9266	834 bp downstream
Tssr9267	transcription start site region 9267	499 bp downstream
Tssr9268	transcription start site region 9268	429 bp downstream
Tssr9269	transcription start site region 9269	92 bp downstream
Tssr9270	transcription start site region 9270	61 bp downstream
Tssr9271	transcription start site region 9271	38 bp downstream
Tssr9272	transcription start site region 9272	7 bp downstream
Tssr9273	transcription start site region 9273	33 bp upstream
Tssr9274	transcription start site region 9274	51 bp upstream
Tssr9275	transcription start site region 9275	78 bp upstream
Tssr9276	transcription start site region 9276	93 bp upstream
Tssr9277	transcription start site region 9277	143 bp upstream
Tssr9278	transcription start site region 9278	164 bp upstream
Tssr9279	transcription start site region 9279	185 bp upstream
Tssr9280	transcription start site region 9280	202 bp upstream
Tssr9281	transcription start site region 9281	308 bp upstream
Tssr9282	transcription start site region 9282	343 bp upstream
Tssr9283	transcription start site region 9283	357 bp upstream
Tssr9284	transcription start site region 9284	372 bp upstream
Tssr9285	transcription start site region 9285	382 bp upstream
Tssr9286	transcription start site region 9286	466 bp upstream
Tssr9287	transcription start site region 9287	979 bp upstream
Tssr9288	transcription start site region 9288	1095 bp upstream
Tssr9289	transcription start site region 9289	1112 bp upstream
Tssr9290	transcription start site region 9290	1268 bp upstream
Tssr9291	transcription start site region 9291	1314 bp upstream
Tssr9292	transcription start site region 9292	1433 bp upstream
Tssr9293	transcription start site region 9293	1462 bp upstream
Tssr9294	transcription start site region 9294	1482 bp upstream
Tssr9295	transcription start site region 9295	1498 bp upstream
Tssr9296	transcription start site region 9296	1520 bp upstream
Tssr9297	transcription start site region 9297	1529 bp upstream
Tssr9298	transcription start site region 9298	1555 bp upstream
Tssr9299	transcription start site region 9299	1577 bp upstream
Tssr9300	transcription start site region 9300	1594 bp upstream
Tssr9301	transcription start site region 9301	1728 bp upstream
Tssr9302	transcription start site region 9302	1758 bp upstream
Tssr9303	transcription start site region 9303	1820 bp upstream
Tssr9304	transcription start site region 9304	1844 bp upstream
Tssr9305	transcription start site region 9305	1862 bp upstream
Tssr9306	transcription start site region 9306	1874 bp upstream
Tssr9307	transcription start site region 9307	1878 bp upstream
Tssr9308	transcription start site region 9308	1911 bp upstream
Tssr9309	transcription start site region 9309	1925 bp upstream
Tssr9310	transcription start site region 9310	1956 bp upstream
Tssr9311	transcription start site region 9311	1968 bp upstream
Tssr9312	transcription start site region 9312	1993 bp upstream