rs582825383 SNP Detail

Summary

• ID
  rs582825383
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:30951194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GGAGGGAGGG AGGGAGGGAG
  R
  GAGAGAGAGA GAGAGAGAGA GGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	LG/J	RIIIS/J	SJL/J	SWR/J
ss921764319	MGP_WTSI_13_30767211	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10SnJ	LG/J	RIIIS/J	SJL/J	SWR/J
rs582825383					SNP	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921764319	MGP_WTSI_13_30767211	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:30951194 () rs orientation: forward

Symbol	Name	Function Class
Irf4	interferon regulatory factor 4	235 bp downstream
Rr476644	regulatory region 476644	983 bp distal
Rr476645	regulatory region 476645	within coordinates
Rr476646	regulatory region 476646	559 bp proximal
Tssr119115	transcription start site region 119115	1032 bp downstream