rs582849647 SNP Detail

Summary

• ID
  rs582849647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117114980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTC TGGGATATGC TTCAGTGGTC
  R
  TGGGGTTGAG CTTGTGAATC TGATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss920637011	MGP_WTSI_10_117279075	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs582849647					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920637011	MGP_WTSI_10_117279075	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117114980 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	243 bp downstream
Lyz2	lysozyme 2	within coordinates
Tssr95904	transcription start site region 95904	1735 bp downstream
Tssr95905	transcription start site region 95905	1667 bp downstream
Tssr95906	transcription start site region 95906	1613 bp downstream
Tssr95907	transcription start site region 95907	1580 bp downstream
Tssr95908	transcription start site region 95908	1399 bp downstream
Tssr95909	transcription start site region 95909	1309 bp downstream
Tssr95910	transcription start site region 95910	1163 bp downstream
Tssr95911	transcription start site region 95911	1055 bp downstream
Tssr95912	transcription start site region 95912	984 bp downstream
Tssr95913	transcription start site region 95913	907 bp downstream
Tssr95914	transcription start site region 95914	1559 bp upstream
Tssr95915	transcription start site region 95915	1637 bp upstream
Tssr99410	transcription start site region 99410	1623 bp upstream
Tssr99411	transcription start site region 99411	1545 bp upstream
Tssr99412	transcription start site region 99412	1439 bp upstream
Tssr99413	transcription start site region 99413	1386 bp upstream
Tssr99414	transcription start site region 99414	1272 bp upstream
Tssr99415	transcription start site region 99415	1212 bp upstream
Tssr99416	transcription start site region 99416	1145 bp upstream
Tssr99417	transcription start site region 99417	1070 bp upstream
Tssr99418	transcription start site region 99418	1051 bp upstream
Tssr99419	transcription start site region 99419	1013 bp upstream
Tssr99420	transcription start site region 99420	955 bp upstream
Tssr99421	transcription start site region 99421	879 bp upstream
Tssr99422	transcription start site region 99422	157 bp upstream
Tssr99423	transcription start site region 99423	1592 bp downstream
Tssr99424	transcription start site region 99424	1660 bp downstream
Tssr99425	transcription start site region 99425	1705 bp downstream
Tssr99426	transcription start site region 99426	1927 bp downstream