rs582862544 SNP Detail

Summary

• ID
  rs582862544
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58893910 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTC CCACAGGCAA GGGGTATGCA
  H
  GGGGGTGGGG TTGGGGGTGG GGGGG                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J
ss920914889	MGP_WTSI_11_59003084	EVA_MGPV3	EVA_MGPV3	f	SNP	A	T	A	A	A	T	T	T	T	A	A	A	A	T	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J
rs582862544					SNP	A	T	A	A	A	T	T	T	T	A	A	A	A	T	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920914889	MGP_WTSI_11_59003084	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58893910 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	within coordinates
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Tssr101782	transcription start site region 101782	134 bp downstream
Tssr101783	transcription start site region 101783	115 bp downstream
Tssr101784	transcription start site region 101784	103 bp downstream
Tssr108189	transcription start site region 108189	891 bp upstream
Tssr108190	transcription start site region 108190	853 bp upstream
Tssr108191	transcription start site region 108191	718 bp upstream
Tssr108192	transcription start site region 108192	699 bp upstream
Tssr108193	transcription start site region 108193	683 bp upstream
Tssr108194	transcription start site region 108194	635 bp upstream