rs582950393 SNP Detail

Summary

• ID
  rs582950393
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126625979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCGC GCGCGCCCAG CCGGCGCCTC
  G
  GGGAGGGCGG GGGAGGGCGC GAGGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J
ss919040341	MGP_WTSI_7_127026807	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J
rs582950393					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919040341	MGP_WTSI_7_127026807	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126625979 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19727	CpG island 19727	within coordinates
Gm31749	predicted gene, 31749	within coordinates
Kif22	kinesin family member 22	922 bp downstream
Maz	MYC-associated zinc finger protein (purine-binding transcription factor)	within coordinates
Rr166710	regulatory region 166710	within coordinates
Rr370584	regulatory region 370584	412 bp upstream
Tssr74905	transcription start site region 74905	1880 bp upstream
Tssr74906	transcription start site region 74906	1672 bp upstream
Tssr74907	transcription start site region 74907	1650 bp upstream
Tssr74908	transcription start site region 74908	1243 bp upstream
Tssr74909	transcription start site region 74909	955 bp upstream
Tssr74910	transcription start site region 74910	918 bp upstream
Tssr74911	transcription start site region 74911	853 bp upstream
Tssr74912	transcription start site region 74912	664 bp upstream
Tssr74913	transcription start site region 74913	561 bp upstream
Tssr74914	transcription start site region 74914	526 bp upstream
Tssr74915	transcription start site region 74915	497 bp upstream
Tssr74916	transcription start site region 74916	463 bp upstream
Tssr74917	transcription start site region 74917	382 bp upstream
Tssr74918	transcription start site region 74918	333 bp upstream
Tssr74919	transcription start site region 74919	311 bp upstream
Tssr74920	transcription start site region 74920	266 bp upstream
Tssr74921	transcription start site region 74921	199 bp upstream
Tssr74922	transcription start site region 74922	169 bp upstream
Tssr74923	transcription start site region 74923	27 bp upstream
Tssr74924	transcription start site region 74924	within coordinates
Tssr74925	transcription start site region 74925	175 bp downstream
Tssr74926	transcription start site region 74926	220 bp downstream
Tssr74927	transcription start site region 74927	339 bp downstream
Tssr74928	transcription start site region 74928	1313 bp downstream