rs583039285 SNP Detail

Summary

• ID
  rs583039285
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:34200678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG AGAACGCGTT TGTAACAGTT
  C
  CTGTTGCAGA GGATCCAGGG TGAGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	KK/HlJ	LP/J	NON/ShiLtJ	QSi3/Ianm
ss923519976	MGP_WTSI_17_33981704	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	KK/HlJ	LP/J	NON/ShiLtJ	QSi3/Ianm
rs583039285					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923519976	MGP_WTSI_17_33981704	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:34200678 () rs orientation: forward

Symbol	Name	Function Class
AA388235	expressed sequence AA388235	within coordinates
Cpgi9020	CpG island 9020	16 bp distal
Gm4152	predicted gene 4152	946 bp upstream
Gm53998	predicted gene, 53998	404 bp downstream
Gm66175	predicted gene, 66175	within coordinates
Rr392547	regulatory region 392547	within coordinates
Rr526006	regulatory region 526006	823 bp distal
Rr526007	regulatory region 526007	228 bp distal
Rr526008	regulatory region 526008	392 bp distal
Rr526009	regulatory region 526009	within coordinates
Rr526010	regulatory region 526010	626 bp proximal
Rr526011	regulatory region 526011	642 bp proximal