rs583051804 SNP Detail

Summary

• ID
  rs583051804
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25112870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTC CCCTCCCCTC CCCTCCCCTC
  C
  CCTCCCCTCC CCTCCCCTCC CCTCC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C57BL/6J	CE/J	FVB/NJ	PL/J
ss918598699	MGP_WTSI_7_25413445	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	C57BL/6J	CE/J	FVB/NJ	PL/J
rs583051804					SNP	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918598699	MGP_WTSI_7_25413445	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25112870 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	559 bp upstream
Rr164493	regulatory region 164493	260 bp proximal
Rr170192	regulatory region 170192	1119 bp distal
Rr170193	regulatory region 170193	within coordinates
Tssr2143	transcription start site region 2143	643 bp upstream
Tssr2144	transcription start site region 2144	495 bp upstream
Tssr2145	transcription start site region 2145	471 bp upstream
Tssr2146	transcription start site region 2146	458 bp upstream
Tssr2147	transcription start site region 2147	413 bp upstream
Tssr71243	transcription start site region 71243	629 bp upstream
Tssr71244	transcription start site region 71244	604 bp upstream
Tssr71245	transcription start site region 71245	589 bp upstream
Tssr71246	transcription start site region 71246	560 bp upstream
Tssr71247	transcription start site region 71247	532 bp upstream