rs583112566 SNP Detail

Summary

• ID
  rs583112566
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30820409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC AGGAAACCCT GTCTCGAAAA
  G
  AAAAAAAAAA AAAAAAGAAA AGAAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
ss915336408	MGP_WTSI_2_30930397	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	CE/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
rs583112566					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915336408	MGP_WTSI_2_30930397	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30820409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11459	CpG island 11459	415 bp distal
Gm57831	predicted gene, 57831	within coordinates
Rr42639	regulatory region 42639	1609 bp distal
Rr53735	regulatory region 53735	1595 bp proximal
Rr56594	regulatory region 56594	1608 bp distal
Rr56595	regulatory region 56595	208 bp distal
Tssr17154	transcription start site region 17154	1229 bp downstream
Tssr17155	transcription start site region 17155	360 bp downstream
Tssr23407	transcription start site region 23407	1399 bp upstream
Tssr23408	transcription start site region 23408	504 bp upstream
Tssr23409	transcription start site region 23409	489 bp upstream
Tssr23410	transcription start site region 23410	292 bp upstream
Tssr23411	transcription start site region 23411	1625 bp downstream