rs583120855 SNP Detail

Summary

• ID
  rs583120855
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38528725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCGTC CCCCGCCCGC CAGGGCCCGG
  C
  CGGTGCCCCA CCCCCGCCTG CCTGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss917952008	MGP_WTSI_6_38551790	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs583120855					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917952008	MGP_WTSI_6_38551790	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38528725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17313	CpG island 17313	within coordinates
Gm56952	predicted gene, 56952	500 bp downstream
Gm67915	predicted gene, 67915	537 bp upstream
Luc7l2	LUC7-like 2 (S. cerevisiae)	within coordinates
Rr399618	regulatory region 399618	121 bp upstream
Rr628836	regulatory region 628836	1017 bp distal
Rr628837	regulatory region 628837	548 bp distal
Rr628838	regulatory region 628838	868 bp distal
Rr628839	regulatory region 628839	within coordinates
Rr628840	regulatory region 628840	24 bp proximal
Tssr55654	transcription start site region 55654	983 bp downstream
Tssr55655	transcription start site region 55655	297 bp downstream
Tssr55656	transcription start site region 55656	254 bp downstream
Tssr55657	transcription start site region 55657	240 bp downstream
Tssr55658	transcription start site region 55658	221 bp downstream
Tssr55659	transcription start site region 55659	within coordinates
Tssr55660	transcription start site region 55660	1102 bp upstream
Tssr60415	transcription start site region 60415	534 bp upstream
Tssr60416	transcription start site region 60416	202 bp downstream