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rs583124177 SNP Detail
Summary
  • ID
    rs583124177
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr17:40160328 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTTTA GTCTCATTGG TTGTTGTAAC
C
CAAGACTATA GGGGCCATGC TAAAT                                      

C = C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ss923560677 MGP_WTSI_17_39849437 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
rs583124177 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss923560677 MGP_WTSI_17_39849437 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:40160328 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
AY036118 cDNA sequence AY036118 within coordinates
Cpgi9159 CpG island 9159 606 bp distal
Gm26917 predicted gene, 26917 649 bp downstream
Rn18s 18S ribosomal RNA 1236 bp distal
Rn18s-rs5 18s RNA, related sequence 5 1235 bp downstream
Tssr144612 transcription start site region 144612 1989 bp downstream
Tssr144613 transcription start site region 144613 1845 bp downstream
Tssr144614 transcription start site region 144614 1823 bp downstream
Tssr144615 transcription start site region 144615 1742 bp downstream
Tssr144616 transcription start site region 144616 1652 bp downstream
Tssr144617 transcription start site region 144617 1625 bp downstream
Tssr144618 transcription start site region 144618 1608 bp downstream
Tssr144619 transcription start site region 144619 1565 bp downstream
Tssr144620 transcription start site region 144620 1542 bp downstream
Tssr144621 transcription start site region 144621 1428 bp downstream
Tssr144622 transcription start site region 144622 1412 bp downstream
Tssr144623 transcription start site region 144623 1382 bp downstream
Tssr144624 transcription start site region 144624 1247 bp downstream
Tssr144625 transcription start site region 144625 1230 bp downstream
Tssr144626 transcription start site region 144626 1201 bp downstream
Tssr144627 transcription start site region 144627 1169 bp downstream
Tssr144628 transcription start site region 144628 1010 bp downstream
Tssr144629 transcription start site region 144629 936 bp downstream
Tssr144630 transcription start site region 144630 927 bp downstream
Tssr144631 transcription start site region 144631 830 bp downstream
Tssr144632 transcription start site region 144632 720 bp downstream
Tssr144633 transcription start site region 144633 673 bp downstream
Tssr148065 transcription start site region 148065 1653 bp upstream
Tssr148066 transcription start site region 148066 1576 bp upstream
Tssr148067 transcription start site region 148067 1476 bp upstream
Tssr148068 transcription start site region 148068 1378 bp upstream
Tssr148069 transcription start site region 148069 1195 bp upstream
Tssr148070 transcription start site region 148070 1131 bp upstream
Tssr148071 transcription start site region 148071 1105 bp upstream
Tssr148072 transcription start site region 148072 777 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory