rs583138141 SNP Detail

Summary

• ID
  rs583138141
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:53933692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCGG GACAGCGCCG GGGCGCGGGC
  S
  CGGGCCCGGG GCGGCGAGTC AGTCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss924333456	MGP_WTSI_19_53945261	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs583138141					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924333456	MGP_WTSI_19_53945261	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53933692 () rs orientation: forward

Symbol	Name	Function Class
Bbip1	BBSome interacting protein 1	634 bp upstream
Cpgi11070	CpG island 11070	within coordinates
Rr394562	regulatory region 394562	575 bp downstream
Rr549684	regulatory region 549684	1092 bp distal
Rr549685	regulatory region 549685	1349 bp distal
Rr549686	regulatory region 549686	945 bp distal
Rr549687	regulatory region 549687	812 bp distal
Rr549688	regulatory region 549688	371 bp distal
Rr549689	regulatory region 549689	within coordinates
Shoc2	Shoc2, leucine rich repeat scaffold protein	within coordinates
Tssr5553	transcription start site region 5553	997 bp upstream
Tssr157049	transcription start site region 157049	1165 bp downstream
Tssr157050	transcription start site region 157050	394 bp downstream
Tssr157051	transcription start site region 157051	354 bp downstream
Tssr157052	transcription start site region 157052	655 bp upstream
Tssr159836	transcription start site region 159836	1035 bp upstream
Tssr159837	transcription start site region 159837	1006 bp upstream
Tssr159838	transcription start site region 159838	774 bp upstream
Tssr159839	transcription start site region 159839	629 bp upstream