rs583142372 SNP Detail

Summary

• ID
  rs583142372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137180981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAG TGGTGACATC AGAAGTGGTT
  R
  TGACTTCAGC CGTGGTGGTG ACATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RIIIS/J	SM/J	ST/bJ	WSB/EiJ
ss925325442	MGP_WTSI_5_137152133_mm38	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	A	A	A	A	A	A	G	A	G	G	A	A	G	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	RIIIS/J	SM/J	ST/bJ	WSB/EiJ
rs583142372					SNP	G	A	G	A	A	A	A	A	A	G	A	G	G	A	A	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss925325442	MGP_WTSI_5_137152133_mm38	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137180981 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1678	transcription start site region 1678	1640 bp upstream
Tssr1679	transcription start site region 1679	696 bp upstream
Tssr1680	transcription start site region 1680	669 bp downstream
Tssr1681	transcription start site region 1681	654 bp upstream
Tssr1682	transcription start site region 1682	637 bp upstream
Tssr1683	transcription start site region 1683	547 bp upstream
Tssr1684	transcription start site region 1684	528 bp upstream
Tssr1685	transcription start site region 1685	519 bp downstream
Tssr1686	transcription start site region 1686	495 bp upstream
Tssr1687	transcription start site region 1687	440 bp upstream
Tssr1688	transcription start site region 1688	405 bp upstream
Tssr1689	transcription start site region 1689	376 bp downstream
Tssr1690	transcription start site region 1690	231 bp downstream
Tssr1691	transcription start site region 1691	225 bp upstream
Tssr1692	transcription start site region 1692	58 bp upstream
Tssr1693	transcription start site region 1693	71 bp upstream
Tssr1694	transcription start site region 1694	109 bp downstream
Tssr1695	transcription start site region 1695	228 bp upstream
Tssr1696	transcription start site region 1696	285 bp upstream
Tssr49310	transcription start site region 49310	1990 bp downstream
Tssr49311	transcription start site region 49311	1966 bp downstream
Tssr49312	transcription start site region 49312	1575 bp downstream
Tssr49313	transcription start site region 49313	1337 bp downstream
Tssr49314	transcription start site region 49314	1071 bp downstream
Tssr49315	transcription start site region 49315	1041 bp downstream
Tssr49316	transcription start site region 49316	131 bp downstream
Tssr49317	transcription start site region 49317	120 bp upstream
Tssr49318	transcription start site region 49318	302 bp upstream
Tssr53927	transcription start site region 53927	2000 bp upstream
Tssr53928	transcription start site region 53928	1987 bp upstream
Tssr53929	transcription start site region 53929	1947 bp upstream
Tssr53930	transcription start site region 53930	1876 bp upstream
Tssr53931	transcription start site region 53931	1858 bp upstream
Tssr53932	transcription start site region 53932	1840 bp upstream
Tssr53933	transcription start site region 53933	1801 bp upstream
Tssr53934	transcription start site region 53934	1768 bp upstream
Tssr53935	transcription start site region 53935	1715 bp upstream
Tssr53936	transcription start site region 53936	1692 bp upstream
Tssr53937	transcription start site region 53937	1607 bp upstream
Tssr53938	transcription start site region 53938	1566 bp upstream
Tssr53939	transcription start site region 53939	1517 bp upstream
Tssr53940	transcription start site region 53940	1316 bp upstream
Tssr53941	transcription start site region 53941	1297 bp upstream
Tssr53942	transcription start site region 53942	1246 bp upstream
Tssr53943	transcription start site region 53943	1082 bp upstream
Tssr53944	transcription start site region 53944	1030 bp upstream
Tssr53945	transcription start site region 53945	1011 bp upstream
Tssr53946	transcription start site region 53946	996 bp upstream
Tssr53947	transcription start site region 53947	885 bp upstream
Tssr53948	transcription start site region 53948	within coordinates
Tssr53949	transcription start site region 53949	38 bp downstream
Tssr53950	transcription start site region 53950	160 bp downstream
Tssr53951	transcription start site region 53951	272 bp downstream
Tssr53952	transcription start site region 53952	286 bp downstream
Tssr53953	transcription start site region 53953	376 bp downstream