rs583170205 SNP Detail

Summary

• ID
  rs583170205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72537247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAA TTTTATTTAT GTTTTGTTTT
  R
  TTTTTTATTT ATTTATTTAT TTGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss924615113	MGP_WTSI_X_73493641	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs583170205					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924615113	MGP_WTSI_X_73493641	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72537247 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4565	regulatory region 4565	within coordinates
Rr6090	regulatory region 6090	247 bp distal
Rr7747	regulatory region 7747	1326 bp proximal
Rr10758	regulatory region 10758	within coordinates
Tssr5633	transcription start site region 5633	364 bp downstream
Tssr5634	transcription start site region 5634	1056 bp downstream
Tssr5635	transcription start site region 5635	1411 bp downstream
Tssr161215	transcription start site region 161215	1637 bp downstream
Tssr161216	transcription start site region 161216	1619 bp downstream
Tssr161217	transcription start site region 161217	1580 bp downstream
Tssr161218	transcription start site region 161218	1567 bp downstream
Tssr161219	transcription start site region 161219	1506 bp downstream
Tssr161220	transcription start site region 161220	903 bp downstream
Tssr161221	transcription start site region 161221	844 bp downstream
Tssr161222	transcription start site region 161222	829 bp downstream
Tssr161223	transcription start site region 161223	659 bp downstream
Tssr161224	transcription start site region 161224	605 bp downstream
Tssr161225	transcription start site region 161225	427 bp downstream
Tssr161226	transcription start site region 161226	376 bp downstream
Tssr161227	transcription start site region 161227	326 bp downstream
Tssr161228	transcription start site region 161228	957 bp upstream
Tssr161229	transcription start site region 161229	990 bp upstream
Tssr161230	transcription start site region 161230	1014 bp upstream
Tssr161231	transcription start site region 161231	1031 bp upstream
Tssr161232	transcription start site region 161232	1082 bp upstream
Tssr161233	transcription start site region 161233	1154 bp upstream
Tssr161234	transcription start site region 161234	1174 bp upstream
Tssr161235	transcription start site region 161235	1239 bp upstream
Tssr161236	transcription start site region 161236	1282 bp upstream
Tssr161237	transcription start site region 161237	1336 bp upstream
Tssr161238	transcription start site region 161238	1372 bp upstream
Tssr161239	transcription start site region 161239	1421 bp upstream
Tssr161240	transcription start site region 161240	1435 bp upstream
Tssr161241	transcription start site region 161241	1471 bp upstream
Tssr161242	transcription start site region 161242	1504 bp upstream
Tssr161243	transcription start site region 161243	1668 bp upstream
Tssr161244	transcription start site region 161244	1692 bp upstream
Tssr161245	transcription start site region 161245	1787 bp upstream
Tssr161246	transcription start site region 161246	1943 bp upstream
Tssr161247	transcription start site region 161247	1966 bp upstream
Tssr163545	transcription start site region 163545	1578 bp upstream
Tssr163546	transcription start site region 163546	1514 bp upstream
Tssr163547	transcription start site region 163547	977 bp downstream
Tssr163548	transcription start site region 163548	1083 bp downstream
Tssr163549	transcription start site region 163549	1160 bp downstream
Tssr163550	transcription start site region 163550	1215 bp downstream
Tssr163551	transcription start site region 163551	1300 bp downstream
Tssr163552	transcription start site region 163552	1426 bp downstream
Tssr163553	transcription start site region 163553	1512 bp downstream
Tssr163554	transcription start site region 163554	1531 bp downstream
Tssr163555	transcription start site region 163555	1558 bp downstream