rs583199901 SNP Detail

Summary

• ID
  rs583199901
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:6156949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACC GCACCCCGCG CCCGCGCCCG
  M
  GCCCGCGCCC GAGCCCGCGC CCGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CE/J	DBA/2J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J
ss923396026	MGP_WTSI_17_6106674	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	CAST/EiJ	CE/J	DBA/2J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J
rs583199901					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923396026	MGP_WTSI_17_6106674	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:6156949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8568	CpG island 8568	within coordinates
Gm65964	predicted gene, 65964	304 bp upstream
Rr340081	regulatory region 340081	within coordinates
Rr405018	regulatory region 405018	42 bp upstream
Tssr4988	transcription start site region 4988	596 bp upstream
Tssr142458	transcription start site region 142458	192 bp downstream
Tssr142459	transcription start site region 142459	111 bp downstream
Tssr142460	transcription start site region 142460	74 bp downstream
Tssr142461	transcription start site region 142461	57 bp downstream
Tssr142462	transcription start site region 142462	134 bp upstream
Tssr142463	transcription start site region 142463	150 bp upstream
Tssr142464	transcription start site region 142464	176 bp upstream
Tssr142465	transcription start site region 142465	206 bp upstream
Tssr142466	transcription start site region 142466	234 bp upstream
Tssr142467	transcription start site region 142467	460 bp upstream
Tssr146313	transcription start site region 146313	367 bp upstream
Tssr146314	transcription start site region 146314	186 bp upstream
Tssr146315	transcription start site region 146315	135 bp upstream
Tulp4	TUB like protein 4	within coordinates