rs583329637 SNP Detail

Summary

• ID
  rs583329637
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54688544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTG CTGCTGCTGC TGCTGCTCCT
  S
  CTCCTCCTCC TCCTCCTCCT CCTCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	MA/MyJ	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J
ss922322569	MGP_WTSI_14_54451087	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	MA/MyJ	NOD/ShiLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J
rs583329637					SNP	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922322569	MGP_WTSI_14_54451087	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54688544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6457	CpG island 6457	1543 bp distal
Gm24424	predicted gene, 24424	1023 bp upstream
Rr289214	regulatory region 289214	1344 bp distal
Rr297196	regulatory region 297196	1543 bp distal
Rr389675	regulatory region 389675	1059 bp upstream
Rr404097	regulatory region 404097	1713 bp downstream