rs583342138 SNP Detail

Summary

• ID
  rs583342138
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26317931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAT CACAATCAAA CAGGCCTTTG
  R
  GGAGGGATGT GGACACTGCT TGCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	FVB/NJ	I/LnJ	LEWES/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss923491334	MGP_WTSI_17_26098957	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	A	G	G	G	G	G	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	FVB/NJ	I/LnJ	LEWES/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs583342138					SNP	A	G	A	G	G	G	G	G	A	A	A	A	A	G	A	A	A	A	A	A	A	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923491334	MGP_WTSI_17_26098957	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26317931 () rs orientation: forward

Symbol	Name	Function Class
Gm8186	predicted gene 8186	34 bp downstream
Rr523763	regulatory region 523763	477 bp proximal
Tssr146918	transcription start site region 146918	300 bp downstream