About   Help   FAQ
rs583417391 SNP Detail
Summary
  • ID
    rs583417391
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr3:93353278 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          GAAGA GCAGCTGCGG GACAGACCAT
C
CCGCCGGGAA CAAGAACGCC ACCAG                                      

C = C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss916289616 MGP_WTSI_3_93445971 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs583417391 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss916289616 MGP_WTSI_3_93445971 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93353278 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 1177 bp upstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr961 transcription start site region 961 1965 bp downstream
Tssr962 transcription start site region 962 845 bp downstream
Tssr963 transcription start site region 963 809 bp downstream
Tssr964 transcription start site region 964 710 bp downstream
Tssr30361 transcription start site region 30361 1687 bp downstream
Tssr30362 transcription start site region 30362 1671 bp downstream
Tssr30363 transcription start site region 30363 1529 bp downstream
Tssr30364 transcription start site region 30364 1457 bp downstream
Tssr30365 transcription start site region 30365 1422 bp downstream
Tssr30366 transcription start site region 30366 1369 bp downstream
Tssr30367 transcription start site region 30367 1330 bp downstream
Tssr30368 transcription start site region 30368 1306 bp downstream
Tssr30369 transcription start site region 30369 1302 bp downstream
Tssr30370 transcription start site region 30370 1293 bp downstream
Tssr30371 transcription start site region 30371 1266 bp downstream
Tssr30372 transcription start site region 30372 1256 bp downstream
Tssr30373 transcription start site region 30373 1203 bp downstream
Tssr30374 transcription start site region 30374 1189 bp downstream
Tssr30375 transcription start site region 30375 1176 bp downstream
Tssr30376 transcription start site region 30376 1140 bp downstream
Tssr30377 transcription start site region 30377 1114 bp downstream
Tssr30378 transcription start site region 30378 1092 bp downstream
Tssr30379 transcription start site region 30379 1075 bp downstream
Tssr30380 transcription start site region 30380 996 bp downstream
Tssr30381 transcription start site region 30381 979 bp downstream
Tssr30382 transcription start site region 30382 924 bp downstream
Tssr30383 transcription start site region 30383 913 bp downstream
Tssr30384 transcription start site region 30384 904 bp downstream
Tssr30385 transcription start site region 30385 879 bp downstream
Tssr30386 transcription start site region 30386 857 bp downstream
Tssr30387 transcription start site region 30387 763 bp downstream
Tssr30388 transcription start site region 30388 744 bp downstream
Tssr30389 transcription start site region 30389 722 bp downstream
Tssr30390 transcription start site region 30390 651 bp downstream
Tssr30391 transcription start site region 30391 641 bp downstream
Tssr30392 transcription start site region 30392 623 bp downstream
Tssr30393 transcription start site region 30393 612 bp downstream
Tssr30394 transcription start site region 30394 586 bp downstream
Tssr30395 transcription start site region 30395 559 bp downstream
Tssr30396 transcription start site region 30396 509 bp downstream
Tssr30397 transcription start site region 30397 493 bp downstream
Tssr30398 transcription start site region 30398 415 bp downstream
Tssr30399 transcription start site region 30399 336 bp downstream
Tssr30400 transcription start site region 30400 105 bp upstream
Tssr30401 transcription start site region 30401 125 bp upstream
Tssr30402 transcription start site region 30402 224 bp upstream
Tssr30403 transcription start site region 30403 264 bp upstream
Tssr30404 transcription start site region 30404 1402 bp upstream
Tssr30405 transcription start site region 30405 1513 bp upstream
Tssr30406 transcription start site region 30406 1661 bp upstream
Tssr30407 transcription start site region 30407 1856 bp upstream
Tssr34355 transcription start site region 34355 1933 bp upstream
Tssr34356 transcription start site region 34356 1252 bp upstream
Tssr34357 transcription start site region 34357 1187 bp upstream
Tssr34358 transcription start site region 34358 1128 bp upstream
Tssr34359 transcription start site region 34359 1053 bp upstream
Tssr34360 transcription start site region 34360 1008 bp upstream
Tssr34361 transcription start site region 34361 951 bp upstream
Tssr34362 transcription start site region 34362 938 bp upstream
Tssr34363 transcription start site region 34363 913 bp upstream
Tssr34364 transcription start site region 34364 898 bp upstream
Tssr34365 transcription start site region 34365 872 bp upstream
Tssr34366 transcription start site region 34366 804 bp upstream
Tssr34367 transcription start site region 34367 639 bp upstream
Tssr34368 transcription start site region 34368 609 bp upstream
Tssr34369 transcription start site region 34369 583 bp upstream
Tssr34370 transcription start site region 34370 557 bp upstream
Tssr34371 transcription start site region 34371 414 bp upstream
Tssr34372 transcription start site region 34372 237 bp downstream
Tssr34373 transcription start site region 34373 1405 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory