rs583509837 SNP Detail

Summary

• ID
  rs583509837
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137179314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGT GACTACATCA GTGGTTGTGA
  T
  TTCATCAGTG GTTGTGACTT CAGCA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PL/J	RIIIS/J	SM/J	ST/bJ
ss917727732	MGP_WTSI_5_137150466	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	JF1/MsJ	MOLF/EiJ	NON/ShiLtJ	PL/J	RIIIS/J	SM/J	ST/bJ
rs583509837					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727732	MGP_WTSI_5_137150466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137179314 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	1198 bp upstream
Tssr1678	transcription start site region 1678	18 bp downstream
Tssr1679	transcription start site region 1679	961 bp downstream
Tssr1680	transcription start site region 1680	981 bp upstream
Tssr1681	transcription start site region 1681	1004 bp downstream
Tssr1682	transcription start site region 1682	1021 bp downstream
Tssr1683	transcription start site region 1683	1110 bp downstream
Tssr1684	transcription start site region 1684	1126 bp downstream
Tssr1685	transcription start site region 1685	1140 bp upstream
Tssr1686	transcription start site region 1686	1167 bp downstream
Tssr1687	transcription start site region 1687	1218 bp downstream
Tssr1688	transcription start site region 1688	1242 bp downstream
Tssr1689	transcription start site region 1689	1261 bp upstream
Tssr1690	transcription start site region 1690	1428 bp upstream
Tssr1691	transcription start site region 1691	1432 bp downstream
Tssr1692	transcription start site region 1692	1596 bp downstream
Tssr1693	transcription start site region 1693	1738 bp upstream
Tssr1694	transcription start site region 1694	1776 bp downstream
Tssr1695	transcription start site region 1695	1895 bp upstream
Tssr1696	transcription start site region 1696	1952 bp upstream
Tssr49309	transcription start site region 49309	665 bp downstream
Tssr49310	transcription start site region 49310	323 bp downstream
Tssr49311	transcription start site region 49311	299 bp downstream
Tssr49312	transcription start site region 49312	66 bp upstream
Tssr49313	transcription start site region 49313	314 bp upstream
Tssr49314	transcription start site region 49314	585 bp upstream
Tssr49315	transcription start site region 49315	601 bp upstream
Tssr49316	transcription start site region 49316	1517 bp upstream
Tssr49317	transcription start site region 49317	1787 bp upstream
Tssr49318	transcription start site region 49318	1969 bp upstream
Tssr53919	transcription start site region 53919	818 bp upstream
Tssr53920	transcription start site region 53920	783 bp upstream
Tssr53921	transcription start site region 53921	625 bp upstream
Tssr53922	transcription start site region 53922	609 bp upstream
Tssr53923	transcription start site region 53923	567 bp upstream
Tssr53924	transcription start site region 53924	548 bp upstream
Tssr53925	transcription start site region 53925	516 bp upstream
Tssr53926	transcription start site region 53926	482 bp upstream
Tssr53927	transcription start site region 53927	333 bp upstream
Tssr53928	transcription start site region 53928	320 bp upstream
Tssr53929	transcription start site region 53929	280 bp upstream
Tssr53930	transcription start site region 53930	209 bp upstream
Tssr53931	transcription start site region 53931	191 bp upstream
Tssr53932	transcription start site region 53932	173 bp upstream
Tssr53933	transcription start site region 53933	134 bp upstream
Tssr53934	transcription start site region 53934	101 bp upstream
Tssr53935	transcription start site region 53935	48 bp upstream
Tssr53936	transcription start site region 53936	25 bp upstream
Tssr53937	transcription start site region 53937	50 bp downstream
Tssr53938	transcription start site region 53938	86 bp downstream
Tssr53939	transcription start site region 53939	140 bp downstream
Tssr53940	transcription start site region 53940	316 bp downstream
Tssr53941	transcription start site region 53941	356 bp downstream
Tssr53942	transcription start site region 53942	415 bp downstream
Tssr53943	transcription start site region 53943	580 bp downstream
Tssr53944	transcription start site region 53944	629 bp downstream
Tssr53945	transcription start site region 53945	639 bp downstream
Tssr53946	transcription start site region 53946	660 bp downstream
Tssr53947	transcription start site region 53947	768 bp downstream
Tssr53948	transcription start site region 53948	1664 bp downstream
Tssr53949	transcription start site region 53949	1705 bp downstream
Tssr53950	transcription start site region 53950	1827 bp downstream
Tssr53951	transcription start site region 53951	1939 bp downstream
Tssr53952	transcription start site region 53952	1953 bp downstream