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rs583559810 SNP Detail
Summary
  • ID
    rs583559810
  • Variation Type
    SNP
  • Alleles
    G
Genome Location and Flanking Sequence
  • Location
    Chr3:93353064 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CCGCC GGGAACAAGA ACGCCACCAG
G
AACGTGAGGA AGAGCAGCTG CGGGA                                      

G = G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss916289613 MGP_WTSI_3_93445757 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583559810 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss916289613 MGP_WTSI_3_93445757 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93353064 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 963 bp upstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr961 transcription start site region 961 1751 bp downstream
Tssr962 transcription start site region 962 631 bp downstream
Tssr963 transcription start site region 963 595 bp downstream
Tssr964 transcription start site region 964 496 bp downstream
Tssr30357 transcription start site region 30357 1972 bp downstream
Tssr30358 transcription start site region 30358 1854 bp downstream
Tssr30359 transcription start site region 30359 1828 bp downstream
Tssr30360 transcription start site region 30360 1798 bp downstream
Tssr30361 transcription start site region 30361 1473 bp downstream
Tssr30362 transcription start site region 30362 1457 bp downstream
Tssr30363 transcription start site region 30363 1315 bp downstream
Tssr30364 transcription start site region 30364 1243 bp downstream
Tssr30365 transcription start site region 30365 1208 bp downstream
Tssr30366 transcription start site region 30366 1155 bp downstream
Tssr30367 transcription start site region 30367 1116 bp downstream
Tssr30368 transcription start site region 30368 1092 bp downstream
Tssr30369 transcription start site region 30369 1088 bp downstream
Tssr30370 transcription start site region 30370 1079 bp downstream
Tssr30371 transcription start site region 30371 1052 bp downstream
Tssr30372 transcription start site region 30372 1042 bp downstream
Tssr30373 transcription start site region 30373 989 bp downstream
Tssr30374 transcription start site region 30374 975 bp downstream
Tssr30375 transcription start site region 30375 962 bp downstream
Tssr30376 transcription start site region 30376 926 bp downstream
Tssr30377 transcription start site region 30377 900 bp downstream
Tssr30378 transcription start site region 30378 878 bp downstream
Tssr30379 transcription start site region 30379 861 bp downstream
Tssr30380 transcription start site region 30380 782 bp downstream
Tssr30381 transcription start site region 30381 765 bp downstream
Tssr30382 transcription start site region 30382 710 bp downstream
Tssr30383 transcription start site region 30383 699 bp downstream
Tssr30384 transcription start site region 30384 690 bp downstream
Tssr30385 transcription start site region 30385 665 bp downstream
Tssr30386 transcription start site region 30386 643 bp downstream
Tssr30387 transcription start site region 30387 549 bp downstream
Tssr30388 transcription start site region 30388 530 bp downstream
Tssr30389 transcription start site region 30389 508 bp downstream
Tssr30390 transcription start site region 30390 437 bp downstream
Tssr30391 transcription start site region 30391 427 bp downstream
Tssr30392 transcription start site region 30392 409 bp downstream
Tssr30393 transcription start site region 30393 398 bp downstream
Tssr30394 transcription start site region 30394 372 bp downstream
Tssr30395 transcription start site region 30395 345 bp downstream
Tssr30396 transcription start site region 30396 295 bp downstream
Tssr30397 transcription start site region 30397 279 bp downstream
Tssr30398 transcription start site region 30398 201 bp downstream
Tssr30399 transcription start site region 30399 122 bp downstream
Tssr30400 transcription start site region 30400 319 bp upstream
Tssr30401 transcription start site region 30401 339 bp upstream
Tssr30402 transcription start site region 30402 438 bp upstream
Tssr30403 transcription start site region 30403 478 bp upstream
Tssr30404 transcription start site region 30404 1616 bp upstream
Tssr30405 transcription start site region 30405 1727 bp upstream
Tssr30406 transcription start site region 30406 1875 bp upstream
Tssr34352 transcription start site region 34352 1873 bp upstream
Tssr34353 transcription start site region 34353 1867 bp upstream
Tssr34354 transcription start site region 34354 1816 bp upstream
Tssr34355 transcription start site region 34355 1719 bp upstream
Tssr34356 transcription start site region 34356 1038 bp upstream
Tssr34357 transcription start site region 34357 973 bp upstream
Tssr34358 transcription start site region 34358 914 bp upstream
Tssr34359 transcription start site region 34359 839 bp upstream
Tssr34360 transcription start site region 34360 794 bp upstream
Tssr34361 transcription start site region 34361 737 bp upstream
Tssr34362 transcription start site region 34362 724 bp upstream
Tssr34363 transcription start site region 34363 699 bp upstream
Tssr34364 transcription start site region 34364 684 bp upstream
Tssr34365 transcription start site region 34365 658 bp upstream
Tssr34366 transcription start site region 34366 590 bp upstream
Tssr34367 transcription start site region 34367 425 bp upstream
Tssr34368 transcription start site region 34368 395 bp upstream
Tssr34369 transcription start site region 34369 369 bp upstream
Tssr34370 transcription start site region 34370 343 bp upstream
Tssr34371 transcription start site region 34371 200 bp upstream
Tssr34372 transcription start site region 34372 451 bp downstream
Tssr34373 transcription start site region 34373 1619 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory