rs583578376 SNP Detail

Summary

• ID
  rs583578376
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164327393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCA AAGAAACCTT GTGGGAAGGG
  G
  AGGGGAGGGG AGGGGAGGGG AGGGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J
ss915799235	MGP_WTSI_2_164485473	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J
rs583578376					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915799235	MGP_WTSI_2_164485473	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164327393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12662	CpG island 12662	274 bp proximal
Dbndd2	dysbindin domain containing 2	633 bp upstream
Gm10725	predicted gene 10725	58 bp downstream
Gm20458	predicted gene 20458	within coordinates
Rr569631	regulatory region 569631	143 bp proximal
Rr569632	regulatory region 569632	1415 bp proximal
Tssr21598	transcription start site region 21598	594 bp upstream
Tssr21599	transcription start site region 21599	1046 bp upstream
Tssr21600	transcription start site region 21600	1383 bp upstream