rs583582747 SNP Detail

Summary

• ID
  rs583582747
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3072004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGG TCTGCCAGAG CTACACAGTG
  M
  GGCCTTATCT ACAACAAAAC TACAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	C57BR/cdJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RF/J	SM/J	SPRET/EiJ	SWR/J
ss920693831	MGP_WTSI_11_3122004	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	A	C	A	A	A	A	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	C57BR/cdJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	RF/J	SM/J	SPRET/EiJ	SWR/J
rs583582747					SNP	C	C	C	C	C	C	A	C	A	A	A	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920693831	MGP_WTSI_11_3122004	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3072004 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	1260 bp proximal
Gm74511	predicted gene, 74511	within coordinates
Rr369110	regulatory region 369110	1817 bp upstream
Rr402381	regulatory region 402381	779 bp downstream
Rr441449	regulatory region 441449	145 bp proximal
Rr441450	regulatory region 441450	915 bp proximal
Rr441451	regulatory region 441451	1322 bp proximal
Rr441452	regulatory region 441452	1481 bp proximal
Tssr100004	transcription start site region 100004	1995 bp upstream
Tssr106442	transcription start site region 106442	1901 bp downstream