rs583598822 SNP Detail

Summary

• ID
  rs583598822
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44396164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGTGG AGGTGAGGGA GGGAGGGAGG
  G
  AGGGAGGGAG GAAGGGAGGG AGGGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss924296330	MGP_WTSI_19_44407725	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs583598822					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924296330	MGP_WTSI_19_44407725	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44396164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10894	CpG island 10894	74 bp distal
D19Mit1000	DNA segment, Chr 19, Massachusetts Institute of Technology 1000	within coordinates
Gm59215	predicted gene, 59215	576 bp downstream
Rr363360	regulatory region 363360	within coordinates
Scd1	stearoyl-Coenzyme A desaturase 1	16 bp upstream
Tssr5525	transcription start site region 5525	250 bp upstream
Tssr5526	transcription start site region 5526	217 bp upstream
Tssr5527	transcription start site region 5527	207 bp upstream
Tssr5528	transcription start site region 5528	177 bp upstream
Tssr5529	transcription start site region 5529	126 bp upstream
Tssr156612	transcription start site region 156612	1093 bp downstream
Tssr156613	transcription start site region 156613	994 bp downstream
Tssr156614	transcription start site region 156614	295 bp upstream
Tssr159513	transcription start site region 159513	1143 bp upstream
Tssr159514	transcription start site region 159514	1095 bp upstream
Tssr159515	transcription start site region 159515	1073 bp upstream
Tssr159516	transcription start site region 159516	957 bp upstream
Tssr159517	transcription start site region 159517	227 bp upstream
Tssr159518	transcription start site region 159518	156 bp upstream
Tssr159519	transcription start site region 159519	102 bp upstream
Tssr159520	transcription start site region 159520	57 bp upstream
Tssr159521	transcription start site region 159521	13 bp upstream
Tssr159522	transcription start site region 159522	84 bp downstream
Tssr159523	transcription start site region 159523	106 bp downstream
Tssr159524	transcription start site region 159524	158 bp downstream
Tssr159525	transcription start site region 159525	1009 bp downstream
Tssr159526	transcription start site region 159526	1039 bp downstream