rs583620790 SNP Detail

Summary

• ID
  rs583620790
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:60743705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAC ATATTCCAGA AGCTCAACAG
  C
  AACACACAGG TAGTTTTGTT GTCTG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	QSi3/Ianm	RF/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss914695940	MGP_WTSI_1_60704546	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	QSi3/Ianm	RF/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs583620790					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914695940	MGP_WTSI_1_60704546	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:60743705 () rs orientation: forward

Symbol	Name	Function Class
D1Mit126	DNA segment, Chr 1, Massachusetts Institute of Technology 126	812 bp distal
Eif4a-ps4	eukaryotic translation initiation factor 4A, pseudogene 4	within coordinates
Gm57147	predicted gene, 57147	675 bp upstream
Gm57165	predicted gene, 57165	within coordinates
Rr411828	regulatory region 411828	1297 bp distal
Tssr6932	transcription start site region 6932	626 bp downstream
Tssr6933	transcription start site region 6933	532 bp downstream
Tssr6934	transcription start site region 6934	439 bp upstream
Tssr6935	transcription start site region 6935	685 bp upstream
Tssr6936	transcription start site region 6936	741 bp upstream