rs583651262 SNP Detail

Summary

• ID
  rs583651262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47774158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT CTCTCCCTCT CTCCCTCCCT
  Y
  CCTTCCTTCC TTCCTTCCTT CCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BUB/BnJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss924307571	MGP_WTSI_19_47785719	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	BUB/BnJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs583651262					SNP	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924307571	MGP_WTSI_19_47785719	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47774158 () rs orientation: forward

Symbol	Name	Function Class
Cfap43	cilia and flagella associated protein 43	within coordinates
Cpgi11037	CpG island 11037	1036 bp proximal
Tssr159755	transcription start site region 159755	1388 bp downstream