rs583714876 SNP Detail

Summary

• ID
  rs583714876
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111505103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGG GAGCGCGCCC GCGCGCGCGC
  Y
  GTGGCTGAGT CAGGCCCGGG GCGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
ss921567191	MGP_WTSI_12_111538669	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	T	C	C	C	C	T	T	C	C	C	C	C	T	T	C	T	T	T	C	C	T	C	C	T	C	T	T	C	C	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
rs583714876					SNP	C	C	T	T	C	C	C	C	T	T	C	C	C	C	C	T	T	C	T	T	T	C	C	T	C	C	T	C	T	T	C	C	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921567191	MGP_WTSI_12_111538669	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111505103 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	within coordinates
Eif5	eukaryotic translation initiation factor 5	within coordinates
Gm56546	predicted gene, 56546	434 bp upstream
Gm58608	predicted gene, 58608	within coordinates
Gm60631	predicted gene, 60631	35 bp upstream
Rr403512	regulatory region 403512	541 bp downstream
Rr473213	regulatory region 473213	within coordinates
Rr473214	regulatory region 473214	62 bp proximal
Rr473215	regulatory region 473215	124 bp proximal
Tssr115319	transcription start site region 115319	1464 bp downstream
Tssr115320	transcription start site region 115320	426 bp downstream
Tssr115321	transcription start site region 115321	391 bp downstream
Tssr115322	transcription start site region 115322	294 bp downstream
Tssr115323	transcription start site region 115323	187 bp downstream
Tssr115324	transcription start site region 115324	116 bp upstream
Tssr115325	transcription start site region 115325	150 bp upstream
Tssr115326	transcription start site region 115326	765 bp upstream
Tssr115327	transcription start site region 115327	1544 bp upstream
Tssr117828	transcription start site region 117828	713 bp upstream
Tssr117829	transcription start site region 117829	63 bp upstream