rs583719698 SNP Detail

Summary

• ID
  rs583719698
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122968432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAA CCAAGTATTT TCATATATAT
  A
  TATATATATA TATATATATA TATAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi5/Ianm	SWR/J	ZALENDE/EiJ
ss918336261	MGP_WTSI_6_122991473	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi5/Ianm	SWR/J	ZALENDE/EiJ
rs583719698					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918336261	MGP_WTSI_6_122991473	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122968432 () rs orientation: forward

Symbol	Name	Function Class
Clec4a4	C-type lectin domain family 4, member a4	within coordinates
D6Mit300	DNA segment, Chr 6, Massachusetts Institute of Technology 300	17 bp distal
Tssr58744	transcription start site region 58744	1165 bp downstream
Tssr58745	transcription start site region 58745	1108 bp downstream