rs583738092 SNP Detail

Summary

• ID
  rs583738092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106340184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT CCCTCCCTCC CTCCCTCCCT
  Y
  TGTACCTCTC CTGTCCTTCC CTCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss920010658	MGP_WTSI_9_106462985	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	DBA/2J	FVB/NJ	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs583738092					SNP	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920010658	MGP_WTSI_9_106462985	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106340184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22267	CpG island 22267	339 bp distal
Cpgi22268	CpG island 22268	1501 bp proximal
Gpr62	G protein-coupled receptor 62	977 bp downstream
Pcbp4	poly(rC) binding protein 4	within coordinates
Tssr86914	transcription start site region 86914	1090 bp downstream
Tssr86915	transcription start site region 86915	168 bp upstream
Tssr86916	transcription start site region 86916	272 bp upstream
Tssr86917	transcription start site region 86917	395 bp upstream
Tssr86918	transcription start site region 86918	528 bp upstream
Tssr86919	transcription start site region 86919	798 bp upstream
Tssr91318	transcription start site region 91318	1900 bp downstream
Tssr91319	transcription start site region 91319	1917 bp downstream