rs583802759 SNP Detail

Summary

• ID
  rs583802759
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78662659 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC ACTCCCTCTC CCTCTCCCTC
  W
  CCCTCTCCCT CTCCCTCTCC CTCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CZECHII/EiJ	JF1/MsJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ
ss922917255	MGP_WTSI_15_78778459	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	T	T	T	T	A	T	T	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	CZECHII/EiJ	JF1/MsJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ
rs583802759					SNP	A	A	A	A	A	T	T	T	T	A	T	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922917255	MGP_WTSI_15_78778459	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78662659 () rs orientation: forward

Symbol	Name	Function Class
Card10	caspase recruitment domain family, member 10	within coordinates
Gm62343	predicted gene, 62343	1107 bp upstream
Rr304149	regulatory region 304149	within coordinates
Rr314476	regulatory region 314476	within coordinates
Tssr131989	transcription start site region 131989	1096 bp upstream