About   Help   FAQ
rs583821071 SNP Detail
Summary
  • ID
    rs583821071
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:93353982 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CGACC AAGAACTGGA GGAAGAGCGG
Y
TGCGGGACAG AAAGATCCGC CGGGA                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss916289619 MGP_WTSI_3_93446675 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs583821071 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss916289619 MGP_WTSI_3_93446675 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93353982 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 1881 bp upstream
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr962 transcription start site region 962 1549 bp downstream
Tssr963 transcription start site region 963 1513 bp downstream
Tssr964 transcription start site region 964 1414 bp downstream
Tssr30370 transcription start site region 30370 1997 bp downstream
Tssr30371 transcription start site region 30371 1970 bp downstream
Tssr30372 transcription start site region 30372 1960 bp downstream
Tssr30373 transcription start site region 30373 1907 bp downstream
Tssr30374 transcription start site region 30374 1893 bp downstream
Tssr30375 transcription start site region 30375 1880 bp downstream
Tssr30376 transcription start site region 30376 1844 bp downstream
Tssr30377 transcription start site region 30377 1818 bp downstream
Tssr30378 transcription start site region 30378 1796 bp downstream
Tssr30379 transcription start site region 30379 1779 bp downstream
Tssr30380 transcription start site region 30380 1700 bp downstream
Tssr30381 transcription start site region 30381 1683 bp downstream
Tssr30382 transcription start site region 30382 1628 bp downstream
Tssr30383 transcription start site region 30383 1617 bp downstream
Tssr30384 transcription start site region 30384 1608 bp downstream
Tssr30385 transcription start site region 30385 1583 bp downstream
Tssr30386 transcription start site region 30386 1561 bp downstream
Tssr30387 transcription start site region 30387 1467 bp downstream
Tssr30388 transcription start site region 30388 1448 bp downstream
Tssr30389 transcription start site region 30389 1426 bp downstream
Tssr30390 transcription start site region 30390 1355 bp downstream
Tssr30391 transcription start site region 30391 1345 bp downstream
Tssr30392 transcription start site region 30392 1327 bp downstream
Tssr30393 transcription start site region 30393 1316 bp downstream
Tssr30394 transcription start site region 30394 1290 bp downstream
Tssr30395 transcription start site region 30395 1263 bp downstream
Tssr30396 transcription start site region 30396 1213 bp downstream
Tssr30397 transcription start site region 30397 1197 bp downstream
Tssr30398 transcription start site region 30398 1119 bp downstream
Tssr30399 transcription start site region 30399 1040 bp downstream
Tssr30400 transcription start site region 30400 591 bp downstream
Tssr30401 transcription start site region 30401 570 bp downstream
Tssr30402 transcription start site region 30402 470 bp downstream
Tssr30403 transcription start site region 30403 433 bp downstream
Tssr30404 transcription start site region 30404 698 bp upstream
Tssr30405 transcription start site region 30405 809 bp upstream
Tssr30406 transcription start site region 30406 957 bp upstream
Tssr30407 transcription start site region 30407 1152 bp upstream
Tssr34356 transcription start site region 34356 1956 bp upstream
Tssr34357 transcription start site region 34357 1891 bp upstream
Tssr34358 transcription start site region 34358 1832 bp upstream
Tssr34359 transcription start site region 34359 1757 bp upstream
Tssr34360 transcription start site region 34360 1712 bp upstream
Tssr34361 transcription start site region 34361 1655 bp upstream
Tssr34362 transcription start site region 34362 1642 bp upstream
Tssr34363 transcription start site region 34363 1617 bp upstream
Tssr34364 transcription start site region 34364 1602 bp upstream
Tssr34365 transcription start site region 34365 1576 bp upstream
Tssr34366 transcription start site region 34366 1508 bp upstream
Tssr34367 transcription start site region 34367 1343 bp upstream
Tssr34368 transcription start site region 34368 1313 bp upstream
Tssr34369 transcription start site region 34369 1287 bp upstream
Tssr34370 transcription start site region 34370 1261 bp upstream
Tssr34371 transcription start site region 34371 1118 bp upstream
Tssr34372 transcription start site region 34372 457 bp upstream
Tssr34373 transcription start site region 34373 701 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory