rs583827706 SNP Detail

Summary

• ID
  rs583827706
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170901861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG AGAGTTCATC AGGTGATGGC
  A
  GGAGACAGGG CATGGGTGGT TCAGT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	BALB/cByJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	LEWES/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi5/Ianm	SEA/GnJ	SJL/J	ST/bJ	ZALENDE/EiJ
ss915123931	MGP_WTSI_1_171074292	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	BALB/cByJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	LEWES/EiJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi5/Ianm	SEA/GnJ	SJL/J	ST/bJ	ZALENDE/EiJ
rs583827706					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915123931	MGP_WTSI_1_171074292	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170901861 () rs orientation: forward

Symbol	Name	Function Class
n-TDgtc7	nuclear encoded tRNA aspartic acid 7 (anticodon GTC)	1228 bp upstream
n-TGgcc13	nuclear encoded tRNA glycine 13 (anticodon GCC)	10 bp upstream
n-TGtcc5	nuclear encoded tRNA glycine 5 (anticodon TCC)	1887 bp upstream
n-TLcag7	nuclear encoded tRNA leucine 7 (anticodon CAG)	591 bp downstream
Rr423203	regulatory region 423203	1603 bp distal
Rr423204	regulatory region 423204	1792 bp distal