rs583871916 SNP Detail

Summary

• ID
  rs583871916
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94390435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT GGTGCGTCGT GCGCGCGCGC
  R
  CGCGCGCGCA CACACACACA CACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss916295315	MGP_WTSI_3_94483128	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	A	A	G	G	G	G	G	G	G	G	A	G	A	A	A	A	G	G	A	A	G	G	G	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs583871916					SNP	A	G	A	A	G	G	G	G	G	G	G	G	A	G	A	A	A	A	G	G	A	A	G	G	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916295315	MGP_WTSI_3_94483128	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94390435 () rs orientation: forward

Symbol	Name	Function Class
Celf3	CUGBP, Elav-like family member 3	within coordinates
Cpgi13484	CpG island 13484	816 bp proximal
D3Umi4	DNA segment, Chr 3, University of Michigan 4	1946 bp proximal
Gm65215	predicted gene, 65215	212 bp downstream
Gm65218	predicted gene, 65218	1302 bp downstream
Rr580638	regulatory region 580638	13 bp distal
Rr580639	regulatory region 580639	180 bp proximal
Rr580640	regulatory region 580640	1081 bp proximal
Rr580641	regulatory region 580641	1834 bp proximal
Tssr30454	transcription start site region 30454	1196 bp upstream
Tssr30455	transcription start site region 30455	1210 bp upstream
Tssr30456	transcription start site region 30456	1241 bp upstream
Tssr34391	transcription start site region 34391	1087 bp downstream