rs583895475 SNP Detail

Summary

• ID
  rs583895475
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:120273560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAA AACATAAACG GGGGGGGGGG
  K
  GGGGGTTGGA GAGATGGCGC AGGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	BALB/cByJ	C3H/HeJ	C57BL/6J	C57L/J	CE/J	NOD/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SWR/J
ss919569723	MGP_WTSI_8_119546821	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	BALB/cByJ	C3H/HeJ	C57BL/6J	C57L/J	CE/J	NOD/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SWR/J
rs583895475					SNP	T	T	T	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919569723	MGP_WTSI_8_119546821	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:120273560 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mbtps1	membrane-bound transcription factor peptidase, site 1			Intron
				Noncoding-Transcript-Variant
Rr382729	regulatory region 382729			within coordinates
Rr671157	regulatory region 671157			264 bp proximal
Tssr83126	transcription start site region 83126			1738 bp upstream