rs583906906 SNP Detail

Summary

• ID
  rs583906906
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127544606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAT ATCTGATATG TGACCCCCCC
  M
  CCAAAGAGAT CTTGAAAACC ACGAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	LG/J	MA/MyJ	RF/J	WSB/EiJ	ZALENDE/EiJ
ss915682496	MGP_WTSI_2_127702686	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	C	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	LG/J	MA/MyJ	RF/J	WSB/EiJ	ZALENDE/EiJ
rs583906906					SNP	A	A	A	A	A	A	A	C	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915682496	MGP_WTSI_2_127702686	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127544606 () rs orientation: forward

Symbol	Name	Function Class
D2Dcr72	DNA Segment, Chr 2, Derry C. Roopenian 72	77 bp distal
Gm10765	predicted gene 10765	within coordinates
Mall	mal, T cell differentiation protein-like	1704 bp downstream
Tssr20034	transcription start site region 20034	265 bp downstream