rs583914239 SNP Detail

Summary

• ID
  rs583914239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:11323112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC TTTCTTTCTT TTTCTTTCTT
  Y
  CTTCCTTCTT TCCTTCCTTC CTTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916587583	MGP_WTSI_4_11323112	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs583914239					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916587583	MGP_WTSI_4_11323112	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:11323112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14033	CpG island 14033	606 bp distal
Dpy19l4	dpy-19 like 4	975 bp upstream
Gm26663	predicted gene, 26663	within coordinates
Rr588912	regulatory region 588912	1137 bp distal
Rr588913	regulatory region 588913	485 bp distal
Rr588914	regulatory region 588914	953 bp distal
Rr588915	regulatory region 588915	834 bp distal
Tssr36477	transcription start site region 36477	1199 bp downstream
Tssr36478	transcription start site region 36478	1175 bp downstream
Tssr36479	transcription start site region 36479	864 bp downstream
Tssr40926	transcription start site region 40926	1023 bp upstream
Tssr40927	transcription start site region 40927	966 bp upstream