rs583979412 SNP Detail

Summary

• ID
  rs583979412
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119418219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAA TTAATAAGAA ATATAATATA
  M
  TATAATATAA TATAATATAA TATAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	DBA/1J	FVB/NJ	I/LnJ	NON/ShiLtJ	NZW/LacJ	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss917663155	MGP_WTSI_5_119280154	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	DBA/1J	FVB/NJ	I/LnJ	NON/ShiLtJ	NZW/LacJ	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs583979412					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917663155	MGP_WTSI_5_119280154	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119418219 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16447	CpG island 16447	772 bp distal
Gm31190	predicted gene, 31190	90 bp downstream