rs583984020 SNP Detail

Summary

• ID
  rs583984020
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125993183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC CTTCCCCTTC CCTTCCCTTC
  T
  CTTCTCTTCC TCTCCTCTTC TCTCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss915678308	MGP_WTSI_2_126151263	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs583984020					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915678308	MGP_WTSI_2_126151263	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125993183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12205	CpG island 12205	572 bp proximal
Dtwd1	DTW domain containing 1	878 bp upstream
Fam227b	family with sequence similarity 227, member B	within coordinates
Rr367293	regulatory region 367293	714 bp upstream
Rr564315	regulatory region 564315	290 bp proximal
Rr564316	regulatory region 564316	731 bp proximal
Rr564317	regulatory region 564317	863 bp proximal
Rr564318	regulatory region 564318	889 bp proximal
Tssr19931	transcription start site region 19931	868 bp upstream
Tssr19932	transcription start site region 19932	902 bp upstream
Tssr26028	transcription start site region 26028	693 bp downstream
Tssr26029	transcription start site region 26029	705 bp downstream
Tssr26030	transcription start site region 26030	752 bp downstream