rs583985311 SNP Detail

Summary

• ID
  rs583985311
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60713309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAT TGGTTTTGTT TTTTTTTTTG
  K
  TTTTTTTTTT TTTTTTTTTT TTTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ
ss915445542	MGP_WTSI_2_60882965	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	G	T	G	T	G	G	T	T	G	T	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	MA/MyJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	RF/J	SEA/GnJ	SPRET/EiJ	WSB/EiJ
rs583985311					SNP	T	T	T	T	G	T	G	T	G	G	T	T	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915445542	MGP_WTSI_2_60882965	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60713309 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11682	CpG island 11682			1071 bp distal
Gm50617	predicted gene, 50617			1 bp downstream
Gm74812	predicted gene, 74812			707 bp downstream
Rbms1	RNA binding motif, single stranded interacting protein 1			Intron
				Noncoding-Transcript-Variant
Rr396988	regulatory region 396988			1968 bp downstream
Rr557731	regulatory region 557731			1974 bp distal
Rr557732	regulatory region 557732			1005 bp distal
Rr557733	regulatory region 557733			390 bp distal
Rr557734	regulatory region 557734			878 bp proximal
Tssr24230	transcription start site region 24230			1759 bp upstream
Tssr24231	transcription start site region 24231			1679 bp upstream
Tssr24232	transcription start site region 24232			1649 bp upstream
Tssr24233	transcription start site region 24233			1611 bp upstream
Tssr24234	transcription start site region 24234			1474 bp upstream
Tssr24235	transcription start site region 24235			925 bp downstream