rs583996701 SNP Detail

Summary

• ID
  rs583996701
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:75313361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA AAAGAAAAAG AAAAAGAAAA
  W
  GAAAAAAAAT CCAGACCTAT TTTTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss917486516	MGP_WTSI_5_75152700	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	A	A	T	T	A	T	T	T	T	T	T	T	A	A	T	A	T	A	A	A	T	T	T	T	T	A	T	T	T	A	T	A	T	T	A	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs583996701					SNP	T	T	T	T	T	A	A	T	T	A	T	T	T	T	T	T	T	A	A	T	A	T	A	A	A	T	T	T	T	T	A	T	T	T	A	T	A	T	T	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917486516	MGP_WTSI_5_75152700	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:75313361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15981	CpG island 15981	1016 bp distal
Cpgi15982	CpG island 15982	101 bp proximal
D5Mit201	DNA segment, Chr 5, Massachusetts Institute of Technology 201	1987 bp proximal
Gm42802	predicted gene 42802	355 bp downstream
Pdgfra	platelet derived growth factor receptor, alpha polypeptide	within coordinates
Rr125352	regulatory region 125352	within coordinates
Tssr46684	transcription start site region 46684	1300 bp downstream
Tssr46685	transcription start site region 46685	514 bp downstream
Tssr46686	transcription start site region 46686	403 bp downstream
Tssr46687	transcription start site region 46687	333 bp downstream
Tssr46688	transcription start site region 46688	822 bp upstream
Tssr46689	transcription start site region 46689	881 bp upstream