rs584020243 SNP Detail

Summary

• ID
  rs584020243
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189790663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAT GTGTGTGTGT ATGCCCAGGT
  R
  TATGGGTGTG ATGTATGTGT ATGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss915198575	MGP_WTSI_1_190058466	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CZECHII/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SM/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs584020243					SNP	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915198575	MGP_WTSI_1_190058466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189790663 () rs orientation: forward

Symbol	Name	Function Class
Gm30446	predicted gene, 30446	within coordinates
Rr21243	regulatory region 21243	within coordinates
Rr21244	regulatory region 21244	1738 bp proximal
Rr32812	regulatory region 32812	338 bp proximal
Tssr10700	transcription start site region 10700	857 bp upstream