rs584046443 SNP Detail

Summary

• ID
  rs584046443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82604096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGG GATTAAGTGA AGCATTCTTC
  Y
  CCCCTCCCCC CATTTGTCCT TTGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss924088007	MGP_WTSI_18_82585971	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs584046443					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924088007	MGP_WTSI_18_82585971	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82604096 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	489 bp proximal
Gm58829	predicted gene, 58829	333 bp upstream
Mbp	myelin basic protein	334 bp downstream
Rr541827	regulatory region 541827	1836 bp distal
Tssr152152	transcription start site region 152152	1846 bp downstream
Tssr152153	transcription start site region 152153	1722 bp downstream
Tssr152154	transcription start site region 152154	1699 bp downstream
Tssr152155	transcription start site region 152155	1663 bp downstream
Tssr152156	transcription start site region 152156	1594 bp downstream
Tssr152157	transcription start site region 152157	1516 bp downstream
Tssr152158	transcription start site region 152158	1479 bp downstream
Tssr152159	transcription start site region 152159	1455 bp downstream
Tssr152160	transcription start site region 152160	1409 bp downstream
Tssr152161	transcription start site region 152161	1393 bp downstream
Tssr152162	transcription start site region 152162	1372 bp downstream
Tssr152163	transcription start site region 152163	1355 bp downstream
Tssr152164	transcription start site region 152164	1310 bp downstream
Tssr152165	transcription start site region 152165	1237 bp downstream
Tssr152166	transcription start site region 152166	1201 bp downstream
Tssr152167	transcription start site region 152167	1169 bp downstream
Tssr152168	transcription start site region 152168	1140 bp downstream
Tssr152169	transcription start site region 152169	1087 bp downstream
Tssr152170	transcription start site region 152170	979 bp downstream
Tssr152171	transcription start site region 152171	935 bp downstream
Tssr152172	transcription start site region 152172	832 bp downstream
Tssr152173	transcription start site region 152173	817 bp downstream
Tssr152174	transcription start site region 152174	783 bp downstream
Tssr152175	transcription start site region 152175	748 bp downstream
Tssr152176	transcription start site region 152176	559 bp downstream
Tssr152177	transcription start site region 152177	379 bp downstream
Tssr154083	transcription start site region 154083	1741 bp upstream
Tssr154084	transcription start site region 154084	1687 bp upstream
Tssr154085	transcription start site region 154085	1430 bp upstream
Tssr154086	transcription start site region 154086	884 bp upstream
Tssr154087	transcription start site region 154087	663 bp upstream
Tssr154088	transcription start site region 154088	634 bp upstream
Tssr154089	transcription start site region 154089	516 bp upstream
Tssr154090	transcription start site region 154090	456 bp upstream