rs584089774 SNP Detail

Summary

• ID
  rs584089774
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGATC ATTGAGGAAC TACACCGCTA
  S
  TGATTTGGTG GATCCTGGCA GAGAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss918626797	MGP_WTSI_7_30422669	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs584089774					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918626797	MGP_WTSI_7_30422669	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122094 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	within coordinates
Cpgi18800	CpG island 18800	425 bp proximal
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	815 bp downstream
Rr400240	regulatory region 400240	236 bp downstream
Rr644814	regulatory region 644814	927 bp distal
Rr644815	regulatory region 644815	253 bp distal
Rr644816	regulatory region 644816	116 bp proximal
Tssr2184	transcription start site region 2184	675 bp upstream
Tssr65714	transcription start site region 65714	927 bp downstream
Tssr65715	transcription start site region 65715	374 bp downstream
Tssr65716	transcription start site region 65716	238 bp downstream
Tssr65717	transcription start site region 65717	225 bp downstream
Tssr65718	transcription start site region 65718	199 bp downstream
Tssr65719	transcription start site region 65719	597 bp upstream
Tssr65720	transcription start site region 65720	636 bp upstream
Tssr65721	transcription start site region 65721	693 bp upstream
Tssr65722	transcription start site region 65722	712 bp upstream
Tssr65723	transcription start site region 65723	743 bp upstream
Tssr65724	transcription start site region 65724	759 bp upstream
Tssr65725	transcription start site region 65725	931 bp upstream
Tssr65726	transcription start site region 65726	938 bp upstream
Tssr65727	transcription start site region 65727	956 bp upstream
Tssr65728	transcription start site region 65728	1251 bp upstream
Tssr65729	transcription start site region 65729	1569 bp upstream
Tssr65730	transcription start site region 65730	1617 bp upstream
Tssr65731	transcription start site region 65731	1643 bp upstream
Tssr65732	transcription start site region 65732	1681 bp upstream
Tssr65733	transcription start site region 65733	1709 bp upstream
Tssr65734	transcription start site region 65734	1750 bp upstream
Tssr71745	transcription start site region 71745	1033 bp upstream