rs584116182 SNP Detail

Summary

• ID
  rs584116182
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:45949642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACC TTTTTTTAAA ATTTTTTTTT
  K
  GGGGGGGGGG CTTTTCGAGA CAGGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	FVB/NJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss925399010	MGP_WTSI_11_46058815_mm38	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	FVB/NJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs584116182					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss925399010	MGP_WTSI_11_46058815_mm38	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:45949642 () rs orientation: forward

Symbol	Name	Function Class
Adam19	ADAM metallopeptidase domain 19	within coordinates
Cpgi2773	CpG island 2773	1514 bp distal
Gm72342	predicted gene, 72342	490 bp upstream
Rr445870	regulatory region 445870	1162 bp distal
Rr445871	regulatory region 445871	643 bp distal
Rr445872	regulatory region 445872	400 bp distal
Rr445873	regulatory region 445873	1304 bp proximal
Rr445874	regulatory region 445874	1731 bp proximal
Tssr107582	transcription start site region 107582	683 bp upstream
Tssr107583	transcription start site region 107583	620 bp upstream