rs584212772 SNP Detail

Summary

• ID
  rs584212772
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137178942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATC ACTAGTGGTT GTGACTTCAG
  G
  AGTGGTGATG ACATCAGCAG TTGTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss917727721	MGP_WTSI_5_137150094	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs584212772					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727721	MGP_WTSI_5_137150094	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137178942 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	826 bp upstream
Tssr1678	transcription start site region 1678	390 bp downstream
Tssr1679	transcription start site region 1679	1333 bp downstream
Tssr1680	transcription start site region 1680	1353 bp upstream
Tssr1681	transcription start site region 1681	1376 bp downstream
Tssr1682	transcription start site region 1682	1393 bp downstream
Tssr1683	transcription start site region 1683	1482 bp downstream
Tssr1684	transcription start site region 1684	1498 bp downstream
Tssr1685	transcription start site region 1685	1512 bp upstream
Tssr1686	transcription start site region 1686	1539 bp downstream
Tssr1687	transcription start site region 1687	1590 bp downstream
Tssr1688	transcription start site region 1688	1614 bp downstream
Tssr1689	transcription start site region 1689	1633 bp upstream
Tssr1690	transcription start site region 1690	1800 bp upstream
Tssr1691	transcription start site region 1691	1804 bp downstream
Tssr1692	transcription start site region 1692	1968 bp downstream
Tssr49309	transcription start site region 49309	293 bp downstream
Tssr49310	transcription start site region 49310	44 bp upstream
Tssr49311	transcription start site region 49311	58 bp upstream
Tssr49312	transcription start site region 49312	438 bp upstream
Tssr49313	transcription start site region 49313	686 bp upstream
Tssr49314	transcription start site region 49314	957 bp upstream
Tssr49315	transcription start site region 49315	973 bp upstream
Tssr49316	transcription start site region 49316	1889 bp upstream
Tssr53919	transcription start site region 53919	446 bp upstream
Tssr53920	transcription start site region 53920	411 bp upstream
Tssr53921	transcription start site region 53921	253 bp upstream
Tssr53922	transcription start site region 53922	237 bp upstream
Tssr53923	transcription start site region 53923	195 bp upstream
Tssr53924	transcription start site region 53924	176 bp upstream
Tssr53925	transcription start site region 53925	144 bp upstream
Tssr53926	transcription start site region 53926	110 bp upstream
Tssr53927	transcription start site region 53927	29 bp downstream
Tssr53928	transcription start site region 53928	47 bp downstream
Tssr53929	transcription start site region 53929	84 bp downstream
Tssr53930	transcription start site region 53930	149 bp downstream
Tssr53931	transcription start site region 53931	174 bp downstream
Tssr53932	transcription start site region 53932	190 bp downstream
Tssr53933	transcription start site region 53933	228 bp downstream
Tssr53934	transcription start site region 53934	260 bp downstream
Tssr53935	transcription start site region 53935	311 bp downstream
Tssr53936	transcription start site region 53936	332 bp downstream
Tssr53937	transcription start site region 53937	422 bp downstream
Tssr53938	transcription start site region 53938	458 bp downstream
Tssr53939	transcription start site region 53939	512 bp downstream
Tssr53940	transcription start site region 53940	688 bp downstream
Tssr53941	transcription start site region 53941	728 bp downstream
Tssr53942	transcription start site region 53942	787 bp downstream
Tssr53943	transcription start site region 53943	952 bp downstream
Tssr53944	transcription start site region 53944	1001 bp downstream
Tssr53945	transcription start site region 53945	1011 bp downstream
Tssr53946	transcription start site region 53946	1032 bp downstream
Tssr53947	transcription start site region 53947	1140 bp downstream