rs584306463 SNP Detail

Summary

• ID
  rs584306463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141011472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG GAGGGGAGGG CAGCGGAGGG
  R
  AGGGCAGCCG AGGGGAGGGC AGCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	SWR/J
ss924901078	MGP_WTSI_X_142228476	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi5/Ianm	SJL/J	SM/J	SPRET/EiJ	SWR/J
rs584306463					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924901078	MGP_WTSI_X_142228476	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141011472 () rs orientation: forward

Symbol	Name	Function Class
Nxt2	nuclear transport factor 2-like export factor 2	within coordinates
Rr8327	regulatory region 8327	within coordinates
Rr406176	regulatory region 406176	457 bp downstream
Tssr162232	transcription start site region 162232	1670 bp downstream
Tssr162233	transcription start site region 162233	525 bp downstream
Tssr162234	transcription start site region 162234	226 bp downstream
Tssr162235	transcription start site region 162235	170 bp downstream
Tssr162236	transcription start site region 162236	223 bp upstream