rs584355885 SNP Detail

Summary

• ID
  rs584355885
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6973344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCC CCAAAACTCT CAAGGCCCCC
  G
  CCCCCCCCCC CCCCAACTCC AGGAG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	CAST/EiJ	CE/J	FVB/NJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ
ss924137307	MGP_WTSI_19_6995976	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	CAST/EiJ	CE/J	FVB/NJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ
rs584355885					SNP	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924137307	MGP_WTSI_19_6995976	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6973344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10541	CpG island 10541	39 bp proximal
Nudt22	nudix hydrolase 22	within coordinates
Rr543531	regulatory region 543531	51 bp proximal
Trpt1	tRNA phosphotransferase 1	155 bp upstream
Tssr154719	transcription start site region 154719	138 bp upstream
Tssr154720	transcription start site region 154720	167 bp upstream
Tssr154721	transcription start site region 154721	236 bp upstream
Tssr157919	transcription start site region 157919	49 bp downstream