AAAAA AACAACAACA ACAACAACAA M AACAAAAAAA CAAAACCAAC CAAAC M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
B10.RIII-H2 |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PWK/PhJ |
RIIIS/J |
SJL/J |
SM/J |
SPRET/EiJ |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss919441597 | MGP_WTSI_8_84710714 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | C | C | A | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | A | C |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | A/J |
B10.RIII-H2 |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PWK/PhJ |
RIIIS/J |
SJL/J |
SM/J |
SPRET/EiJ |
WSB/EiJ |
ZALENDE/EiJ |
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rs584356739 | SNP | C | C | A | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | A | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss919441597 | MGP_WTSI_8_84710714 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/C |
Location: Chr8:85437343 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Nfix | nuclear factor I/X | within coordinates | ||||||
Rr178192 | regulatory region 178192 | 743 bp distal | ||||||
Rr178193 | regulatory region 178193 | 458 bp proximal | ||||||
Rr178194 | regulatory region 178194 | 1858 bp proximal | ||||||
Rr187002 | regulatory region 187002 | 1742 bp distal | ||||||
Rr187003 | regulatory region 187003 | 1057 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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